Characterization of Genes Involved in γ-Aminobutyric Acid Metabolic Pathways Response to Metabolites
Accumulation in Embryos during Barley Germination
Mengyuan Jin1, Qin Wu1, Peiwen Mao1,
Zhiwei Zhou1,3, Weiran Cong2, Juan Lin3 and
Xuanwei Zhou1*
1School of
Agriculture and Biology, Engineering Research Center of Cell &
Therapeutic Antibody, Ministry of Education, Shanghai Jiao Tong University,
Shanghai 200240, People’s Republic of China
2Xuncaofang (Shenyang) Biological
Technology Co., Ltd., Benxi 117004, People’s
Republic of China
3School of Life Sciences, Fudan
University, Shanghai 200439, People’s
Republic of China
*For Correspondence: xuanweizhou@sjtu.edu.cn;
xuanweizhou@163.com
Received 13 May 2020; Accepted 04 January 2021; Published 25 March 2021
Abstract
To reveal the key enzyme genes involved
in γ-aminobutyric acid (GABA) metabolic pathways response to elevated metabolite storage in embryos during
barley germination, this study investigated the GABA content,
cloned GABA
metabolic pathway genes and analyzed their expression
levels, respectively. In barley embryos, GABA content
continued to rise during the soaking process and then decreased
after the germination. Three genes including glutamic acid decarboxylase (GAD),
GABA transaminase (GABA-T) and succinic semialdehyde dehydrogenase (SSADH) involved in the GABA pathway were cloned
and characterized
from the barley embryos, respectively. Before the
germination, the expression of GAD gene was up-regulated, while GABA-T gene
expression was down-regulated. After the germination, GAD gene expression was
lowered, but GABA-T gene expression was rapidly increased.
The
SSADH gene expression remained stable after soaking of 4 h, and then
down-regulated. There is evidence that the high
GABA content in germinating barley seeds is parallel with the upregulation of the GAD gene, and
down-regulation of GABA-T gene. These results indicate that
the expression level of the genes involved in GABA pathway is a crucial factor
in GABA accumulation during soaking and germination. This study is beneficial for
the development of GABA-rich barley products by
germination. © 2021 Friends Science Publishers
Keywords: Barley grains; Germination;
Embryos; γ-aminobutyric acid; Gene expression
Introduction
Gamma-aminobutyric acid (GABA)
is a four-carbon non-protein amino acid isolated from potato tubers in plants (Steward
1949). It has a variety of bioactivity such as inhibitory neurotransmitter (Carmans et al. 2013), lower blood pressure
(Kajimoto et al. 2004), replenish
the brain, treat mental illness, and improve immunity (Zhang et al. 2002; Diana et al. 2014). Because of
the multiple effects on human health, the development of GABA-rich products has
attracted widespread interest among researchers. In Japan, GABA-rich tea, Gabaron, was
brought to the market as a functional food with blood pressure lowering effect (Wang et al. 2013). GABA has been identified
as a new resource food, and extensively used in foods such as soft drinks, condiments,
and dairy products by the Chinese Ministry of Health (Liang et al. 2013). However, the GABA content is
maintained at a low level in an organism. The content ranges of 0.03~2.58 mg/g (FW) in plant
tissues under normal growth conditions (Shelp 2012). For example, the GABA content
is about 0.06~0.09 mg/g (DW) in brown rice, lower in refined rice (Zhang et al. 2002). Germination is an
effective process for improving the nutritional quality and functionality of
cereals. The content of GABA in germinated grains was higher than in the
un-germinated grains (Gangopadhyay et al.
2015). Therefore, developing GABA-rich cereal food with lowering blood
pressure function can largely and effectively alleviate the symptoms of
hypertension in many individuals and reduce the mental stress and economic
burden in the hypertensive population.
Accumulation of GABA content in
plant is related to its anabolic and catabolism pathways. Metabolic pathway of GABA is a metabolic bypass of tricarboxylic
acid (TCA) in the plant that start with TCA cycle in which
α-ketoglutarate is catalyzed by glutamate
dehydrogenase (GHD) to produce glutamate (Glu) (Ling et al. 1994;
Schultz and Coruzzi 1995). When Glu is transported from
mitochondria across the mitochondrial membranes into the cytoplasm, it is
catalyzed by glutamate decarboxylase (GAD) to generate GABA through an
irreversible reaction, and then transported into mitochondria. GABA produces
the succinic semialdehyde (SSA) through GABA-T action . Succinic semialdehyde dehydrogenase
(SSADH) catalyzes a reaction through SSA to generate succinate involved in the
TCA cycle. Furthermore, the reaction catalyzed by SSADH is an irreversible
reaction (Bouche and Fromm 2004; Akçay et al.
2012). Otherwise, SSA generates a γ-hydroxybutyrate (GHB) (Fig. 1). According to which, the synthesis of GABA by activating GAD or inhibiting GABA-T or SSADH
enzyme activity has become a research hotspot. GAD is one of the first key enzymes during the
germination of plant seeds (Lamkin et al.
1983). GAD enzyme activity in germination of soybean seed is correlated
with the content of GABA (Xu and Hu 2014).
GAD enzyme activity after soaking in rice is positively correlated with the
accumulation of GABA, which indicate that the accumulation of GABA in embryo
after soaking is related to the catalytic reaction of GAD (Liu et al. 2005). GABA-T is a key
enzyme in the GABA degradation pathway. In previous studies, such as rice and
tomato using RNA interference technique to decrease the expression of GABA-T can increase GABA content (Koike et al. 2013; Zhou et al. 2015). Therefore, it is very important to regulate the
gene expression of GABA synthesis and degradation pathway to obtain a rich-GABA
food.
Hordeum vulgare Linn. var. nudum Hook. f., mainly
distributed in the Qinghai-Tibet Plateau, is a typical nutrition-balanced crop,
with high content of dietary fiber, vitamins and mineral elements, moderate
protein, and low sugar and fat (Lin et al.
2016). In addition, barley grains are also rich in GABA, β-glucan and polyphenols, etc. (Yang
et al. 2015). The rich bioactive ingredient makes it
become a valuable raw material for the development of functional food (Zhou et al. 2018). However, the studies
were based on barley grains, but the accumulation of GABA was mainly occurred in embryo
and its molecular mechanisms were not reported. In the present study, first time,
the changes of GABA content in embryos of the barley grains were analyzed
during the whole germination process, then the relative gene involved in
GABA metabolisms pathway were cloned, while the gene expression of GABA
metabolic pathway during the soaking and germination were investigated. Results will provide a
theoretical basis for the development of germinating products and the molecular
breeding of barley grains through studying of the accumulation of GABA and
their molecular regulation mechanism during the germination.
Materials and Methods
Seeds soaking, germination and embryos collection
The barley grains were provided by Tibet Shenglong Industry
Co., Ltd. The barley seeds, were soaked and germinating barley seeds
were used further as previously described (Zhang and Zhou 2014), subsequently the embryos were isolated
carefully from barley seed using a scalpel and forceps, which frozen in liquid
nitrogen for further use.
Extraction and determination of GABA
For this purpose, principal
method was
adapted as reported earlier (Liu et
al. 2018). The collected embryos sample was inactivated at 85°C for
30 min, dried at 65°C to constant weight, and then grounded into powder. The
powder 40 mg and 5 mL distilled water were added into a 15 mL centrifuge tube,
treated for 4 h at 200 rpm and 60°C on a constant temperature oscillator,
cycled for three times, and collected the extracting solution. The extracting
solution was mixed together, and then centrifuged at 4000 rpm for 10 min, and
returned to the supernatant for determination of GABA. The GABA content from
the extraction was carried out by the colorimetric method (Luo et al. 2014) at 645 nm wavelength.
RNA extraction
Total RNA was extracted using RNA pure Plant Kit (CWBIO, Beijing, China). The
quality and concentration of isolated RNA were checked by agarose gel
electrophoresis using a spectrophotometer (WFZUV-2100, UnicoTM Instruments
Inc.). Total RNA was treated with RNase-free DNAase I (Promega, Madison, W.I.,
U.S.A.) to remove contaminating genomic DNA.
Cloning of GABA branch genes and bioinformatic analysis
A Takara reverse transcription PCR kit was used for synthesis of first-strand cDNA from about 1μg RNA. According to three putative GABA branch gene
sequences searched from the National Center for Biotechnology Information (NCBI)
(AK355055, AK249113, AK248458), primers listed in Table 1 were designed using
Primer Premier 5.0 software (Premier Biosoft International, Palo Alto, C.A., U.S.A.).
After PCR and following A-tailing procedure, the purified target fragment was
inserted into a pMD 19-T Vector (Takara, Bio Inc., Shiga, Japan) and
transferred into E. coli DH-5α
(Vazyme Biotech Co., Ltd., Nanjing, China). Positive clones were sequenced by
Shanghai Ruidi Biotech Company (Shanghai, China).
Table
1: Primers used
in this study
Names |
Sequences |
Target fragment |
Primers
used in the gene cloning |
||
GAD-F |
5'-CAGAGCCAAGAGCGAGTAGC-3' |
1549 bp |
GAD-R |
5'-GCTTGGATTTTGGACGCTG-3' |
|
GABAT-F |
5'-ATGACGATGATTGCCCGCGGC-3' |
1631bp |
GABAT-R |
5'-CACGGTGTTATTACTGGCATTTG-3' |
|
SSADH-F |
5'-ATGGGCAGCGTGGACGCGG-3' |
1595bp |
SSADH-R |
5'-CCATCTTACACCTTACGCCT-3' |
|
Primers used in the qRT-PCR |
||
qGAD-F |
5’-TCGACATCGACACCGTCATGG-3’ |
170 bp |
qGAD-R |
5’-CTTCTTGGCGAGCACAAACTC-3’ |
|
qGABAT-F |
5’-ACGTGGCCTGGGATTGATAC-3’ |
138 bp |
qGABAT-R |
5’-CCTGCGACCCTGATAAGCAT-3’ |
|
qSSADH-F |
5’-AGCCAACTGTGGTAGGGAAC-3’ |
137 bp |
qSSADH-R |
5’-TAAGCCTGCATTGGTGTCGT-3’ |
|
qactin-F |
5’-CCAGGTATCGCTGACCGTAT-3’ |
139 bp |
qactin-R |
5’-GGAAAGTGCTGAGTGAGGCT-3’ |
Fig. 1: GABA metabolic
pathway and its regulation in plant
Quantitative reverse transcription-PCR (qRT-PCR)
The relative gene expression
analysis was performed with Thermo real-time PCR (RT-PCR) for 8 embryos from
different soaking and germination periods of barley grains. Total RNA was
extracted using a CWBIO kit (Beijing China) and cDNA synthesis was performed by
reverse transcription kit (Takara, Dalian, China) according to the manufacturer's
instructions. Then qRT-PCR was carried out with Takara SYBR Kit (TaKaRa, Dalian,
China) in accordance with the manufacturer’s protocols. Using β-actin (GeneBank: AY145451.1) from
barley as internal reference gene, the specific primers for qRT-PCR
were designed according to reference mRNA sequences of GAD, GABAT, SSADH by using NCBI’s pick
primer software. The program was set as 30 s at 95°C, 40 cycles for 5 s at 95°C and 30 s at 60°C, with a
default melting curve stage for 15 s at 95°C, 1 min at 60°C and 15 s at 95°C. The
target gene expression change was calculated by the comparative ΔCt method
regarding barley β-actin gene as an internal control. All the experiments were conducted for three times
repetitions and the primers were listed in Table 1.
Fig. 2: Changes in GABA content during
barley grains germination
D. Fig. 3: The cloning of key gene of GABA pathway
Statistical analysis
All experiments contained three
parallel tests. Calculations of mean, standard deviation (SD), and P-values were performed on triplicate
experiments using S.P.S.S. 19.0 software (S.P.S.S. Inc., N.Y., U.S.A.). The
Student’s t test was used to calculate P-values for comparison. Significant statistics were set at a P-value < 0.05.
Results
Collection of samples
The barley embryos were selected from
the soaking and germination periods. The soaking period included
original seed, early (2 h), middle (4 h) and later (6 h) soaking, and the
germination period included germination, plumule, radicle and taproot stages (Fig.
2A). Samples also represented morphological characters of barley seed during soaking
and germination.
Changes of GABA content in embryos
Base on the
established standard curves of GABA, the regression R2=0.99 showed
that there exists a linear relationship between GABA content and the
corresponding absorption wave when the GABA content varied range from 0 to 0.5
mg, so it can be used to determine the GABA content in the sample. The results
showed that the GABA content continued to rise during soaking.
For
soaking duration of 6 h, GABA content was the highest (40 mg/g), about 8 times
than in untreated dry seed embryos.
However, the GABA content decreased
after germination (Fig. 2B).
Cloning and sequence analysis of GABA branch gene
Based on the information related
to GABA pathway such as GAD, GABA-T and SSADH, three genes have been isolated
from barley grains by using PCR techniques (Fig. 3A–C). The GAD sequence
obtained by the open reading frame (ORF)-Finder of NCBI,harbored a 1491 bp ORF that
encoded 496 amino acids (Fig. 3D). The GAD sequence has the highest similarity
with Aegilops tauschii GAD1-like
(XM_020292464.1), which is 95% using BLASTN analysis. And the sequence
similarity of other gramineous plant, such as Brachypodium distachyon GAD1 (XM_003558361.3), Oryza sativa GAD1 (XM_015772426.1), Setaria italic GAD1 (XM_004985025.2), Sorghum bicolor GAD1 (XM_002468163.2), Zea mays GAD1 (NM_001174470.1) is among 90–92% (Fig. 4A). All these conclusions showed
that the GAD gene has been cloned
successfully from barley grains. The sequence of the
GABA-T positive clone analyzed by the ORF-Finder of NCBI, harbored a 1524 bp
ORF and encoded 507 amino acids (Fig. 3E). The sequence of GABA-T had
similarity with A. tauschii GABA-T3
(XM_020291859.1), which is 95% using BLASTN analysis. And the sequence
similarity of other gramineous plant, such as B. distachyon GABA-T3 (XM_010236148.3), O. sativa GABA-T3 (XM_015792818.1), S. bicolor GABA-T3 (XM_002445162.2), S. italic GABA-T3 (XM_004972552.3), Z. mays GABA-T1 (XM_008670668.2) is among 81–90% (Fig. 4B). The
sequence of the SSADH
Fig. 4:
Phylogenetic tree of key gene of GABA
pathway
A, B, C.
Phylogenetic tree of GAD, GABA-T and SSADH amino acids sequence, respectively
positive
clone analyzed by the ORF-Finder of NCBI,harbored a 1236 bp ORF and
encoded 411 amino acids (Fig. 3F). The sequence of SSADH was analyzed by
BLASTN, and the results showed that the sequence similarity is the highest with A. tauschii SSADH (XM_020294976.1),
which is 96%. And the sequence similarity of other gramineous plant, such as B. distachyon SSADH (XM_003570288.4), S. bicolor SSADH (XM_021459110.1), S. italic SSADH (XM_004951692.4), Z. mays SSADH (NM_001153701.1), O. sativa SSADH (XM_015771780.1), is
among 88–89% (Fig. 4C). And these conclusions showed that the GAD, GABA-T,
SSADH gene of barley grains has been cloned successfully.
Fig. 5: The Relative expression of key gene in GABA
pathway and the comparison of GABA content during grains germination
A. Relative expression of key gene
in GABA pathway in barley grains embryo during germination; B. Comparison of gene expression in
GABA pathway and GABA content during germination of barley grains
Expression analysis of GABA branch gene in soaking and germination
Expression of three genes involved in GABA pathway in the embryo during germination of barley
grains was determined using qRT-PCR. The results showed that the expression of GAD showed an upward trend before the
bud germination period and decreased after germination (Fig. 5A). However, the
expression of GABA-T was
down-regulated before the bud sprouting period, and then increased rapidly. The
expression of SSADH mainly stayed
stable but deceased after soaking for 4 h. From the early stage to the late
stage during soaking (from 2 h to 6 h), the expression of GAD genes which controlled GABA synthesis was significantly
up-regulated, while the expression of GABA-T
and SSADH in the GABA degradation
pathway showed a downward trend (Fig. 5B). Thus, it was speculated that the
continuous increase of GABA content during this process may be associated with
changes in gene expression. From germination to rooting, the GAD gene expression decreased rapidly,
while the GABA-T gene expression
which controlled the first step of the GABA degradation pathway increased promptly,
and is speculated to cause GABA content to decrease. After rooting, the expression
of GAD in multiple root stage was
higher than its expression in single root stage. Besides, the expression of
GABA-T in multiple root stage became lower, and the GABA content also showed an
upward trend after rooting. The results also showed that during the entire
germination treatment, the expression of the SSADH remained basically unchanged, but then its expression was
down-regulated after soaking for 4 h.
Discussion
Changes in GABA content were accordant with the expression level of gene
and the key enzyme activity in metabolic pathway in various tissues and at
different stages of plant development. For example, there's a lot of GABA in
the fruit before the discoloration period of tomato and citrus fruit, then the GABA
is quickly broken down. This is highly correlated with the activity of the
synthase and catabolism enzyme in the GABA pathway of tomato fruit (Diaz et al. 2005; Cercos et al. 2006;
Akihiro et al. 2008). Metabolic pathway of GABA consists of three
enzymes: GAD, GABA-T and SSADH. Therefore, it is
important to colon the key enzyme genes for analysis
of GABA accumulation in germination at the molecular level. The seed embryo is
the storage place of GABA in barley grains (Inatomi
and Slaughter 1971),
therefore, embryo was selected for further study.
It was demonstrated that changes in the gene expression whose mRNA levels
and their encoding enzymes are related to GABA content in the various
tissues. The GABA content is determined
by the key enzyme gene both the synthesis and the decomposition pathways. The GAD gene is generally considered to be
the key enzyme gene in the GABA synthesis pathway, and the increase of GAD
enzyme activity is the main factor leading to GABA accumulation (Baum et al. 1996; Akama and Takaiwa 2007; Hyun
et al. 2013; Xu and Hu 2014). For example, studies in soybeans
have shown that the GAD enzyme
activity increases with germination, and that the mRNA expression
level of GAD maintains a relatively high level 15 to 35 days after flowering
(Clark et al. 2009; Takahashi et al.
2013; Xu and Hu 2014). Prior to the maturity of tomato fruit, GAD, a key
enzyme activity in the GABA synthesis pathway is high. This indicates that the
GABA accumulation is positively correlated with the activity of GAD enzyme. Decreased the downward trend of GABA-T and
SSADH enzyme activity in the GABA decomposition pathways can also lead to GABA
accumulation. For example, GABA is rapidly degraded after the ripening stage of
tomato fruit. In the same time, the expression of SlGABA-T1 is greatly
increased. This indicates that GABA-T plays a key role in the GABA
decomposition pathways (Akihiro et al.
2008; Koike et al. 2013). However, some studies have suggested
that there is no significant relationship between changes in the key genes expression of the GABA pathway and GABA content. For
example, the GABA content of the frost-resistant barley grains increased
15-fold in response to freeze stress, but without accompanying changes in the
expression of GAD, GABA-T and SSADH genes (Mazzucotelli et al. 2006). It was found that the changes
of GABA concentration did not accompany any change of GABA-T transcriptional abundance when Arabidopsis was domesticated
at low temperature (Kaplan et al.
2007), while it was also found to have no obvious relationship between the
change of GABA-T and GABA content rice grains (Narsai et al. 2009). In the present
study, GABA content in the barley seeds increased gradually with soaking and up
to the highest at 6 h but decreased after germination. Correspondingly, the
expression of GAD gene continued to increase after immersion in water, and
reached the highest point in the later period of water swelling (soaking for 6 h),
this indicates that the increase of GABA content is indeed related to the
activation of GAD gene. From the principle of gene expression regulation
products, the increase in gene expression should be earlier than the increase
in expression products. These experiments showed that the amount of GABA in the
barley grains increased greatly in the early stage of water absorption and
swelling. But there was no significant increase in gene expression, which might
be related to the increasing GABA content in the embryo at the initial stage of
soaking. At this stage, the increase of GABA content is due to the release of
bound GABA, rather than the GAD enzymatic response (Liu et al. 2005). The enzymatic response of GAD promotes
the increase of GABA content mainly in the middle and late stages of grain
swelling.
These
experimental results showed that, in the later stages of hydration swelling of
barley grains, not only the GAD
expression reached the highest level, but also the amount of GABA-T and SSADH reached the lowest. Therefore, it is believed that the barley
grains are dominated by GABA synthesis in the water-swelling period. After the
grains became white, the GABA content began to slowly decline, but reached the
lowest level in the single root stage, and then there is a slight rise, and
this is consistent with the increasing trend of brown rice after germination (Zheng 2006). During the period from whitening
to single root, the expression of GAD
gradually decreased, and the expression of GABA-T
gradually increases. Therefore, the decrease of GABA expression results from
the decrease in the synthesis and the increase in decomposition. The increase
in decomposition is mainly due to the increase in GABA-T enzyme activity, which
is consistent with studies on soybean seed (Takahashi
et al. 2013). Therefore, in order to maintain the amount of GABA in
the barley grain embryo, increasing GAD enzyme activity (after barley grain is
becoming white) or using the GABA-T inhibitor to inhibit the expression of
GABA-T should be tried to use in processing practice. The SSADH is the last key
enzyme in the GABA decomposition pathway, but it does not show an increase in
expression during the period from whitening to a single root. It is speculated
that the decomposition of GABA in grain is mainly regulated by GABA-T. In
addition, SSADH gene in plant has multiple copies, such as three copies in Arabidopsis and maize, and the numbers
of SSADH copies in the barley grains are
unknown, and there
may be other copies of genes that contribute to GABA degradation during this
period.
Conclusion
The evidence indicated that the expression level of the genes involved
in GABA pathway is a crucial factor in soaking and germination.
The GABA content of barley grains in the treatment process varied with the
related gene changes in gene expression in embryos. It
revealed a role that GABA is dominated by anabolic metabolism in soaking, but catabolism
in germination. The
investigation is beneficial for the development of γ-aminobutyric
acid-rich barley products.
Acknowledgments
We
would like to thank director Xin Wang from Tibet Shenglong Industry Co., Ltd for helping us to collect various samples of
barley seeds. This research is financially supported by the Tibet Anada Biomedical Technology Co. Ltd.
(No. 20H100000595), and the Xuncaofang (Shenyang) Biological Technology Co.,
Ltd. (No. 20H100000125).
Author
Contributions
X-W Z managed the
project; X-W Z and J L designed the experiments and provided support for the
experiments; M-Y J, QW and P-W M managed the samples and performed the
experiments. Z-W Z and W-R C led the data analysis and preparation of the
graph, M-Y J and Q W drafted the manuscript; all authors reviewed and approved
the manuscript.
Conflict of Interest
There is no conflict of interest among the authors and the institutions
where the research has been conducted
Data Availability Declaration
All data related to this article are in the custody of corresponding
author and will be available on request
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